You should never upload images into your self replicating web site, and instead, should use conventional methods such as FTP to upload images to your server. You should only have one copy of images on your server, which should be stored in the standard /images/ directory, or similar.
All image links throughout your web pages must be absolute URLs as well, and not relative URLs. For example, you may currently have image links within your pages such as:
<img src="images/title.gif">
These image links need to be changed to:
<img src="http://www.domain.com/images/title.gif">
All images in your web pages must be changed to absolute URLs as explained above, or else they will not show up correctly on your self replicating web site.